Structural alignment software


Structural alignment software

This list of structural comparison and alignment software is a compilation of software tools and web portals used in pairwise or multiple structural comparison and structural alignment.

tructural comparison and alignment

Key

* -- Backbone Atom (Cα) Alignment;
* SSE -- Secondary Structure Elements Alignment;
* Seq -- Sequence-based alignment
* Pair -- Pairwise Alignment (2 structures *only*);
* Multi -- Multiple Structure Alignment (MStA);
* C-Map -- Contact Map


Wikimedia Foundation. 2010.

Look at other dictionaries:

  • Structural alignment — is a form of sequence alignment based on comparison of shape. These alignments attempt to establish equivalences between two or more polymer structures based on their shape and three dimensional conformation. This process is usually applied to… …   Wikipedia

  • List of sequence alignment software — This list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. See structural alignment software for structural alignment of proteins.Database… …   Wikipedia

  • Software tools for molecular microscopy — There are a large number of software tools or software applications that have been specifically developed for the field sometimes referred to as molecular microscopy or cryo electron microscopy or cryoEM. Several special issues of the Journal of… …   Wikipedia

  • Sequence alignment — In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences.[1]… …   Wikipedia

  • Multiple sequence alignment — A multiple sequence alignment (MSA) is a sequence alignment of three or more biological sequences, generally protein, DNA, or RNA. In many cases, the input set of query sequences are assumed to have an evolutionary relationship by which they… …   Wikipedia

  • Homology modeling — Homology modeling, also known as comparative modeling of protein refers to constructing an atomic resolution model of the target protein from its amino acid sequence and an experimental three dimensional structure of a related homologous protein… …   Wikipedia

  • Alineamiento estructural — de tiorredoxinas del ser humano y de la mosca Drosophila melanogaster. Las proteínas se muestran como cintas, con l …   Wikipedia Español

  • Nucleic acid structure prediction — This article is about the computational prediction of nucleic acid structure. For experimental methods, see Nucleic acid structure determination. Nucleic acid structure prediction is a computational method to determine nucleic acid secondary and… …   Wikipedia

  • Protein structure — Proteins are an important class of biological macromolecules present in all biological organisms, made up of such elements as carbon, hydrogen, nitrogen, phosphorus, oxygen, and sulfur. All proteins are polymers of amino acids. The polymers, also …   Wikipedia

  • RNA structure — The functional form of single stranded RNA molecules frequently requires a specific tertiary structure. The scaffold for this structure is provided by secondary structural elements which are hydrogen bonds within the molecule. This leads to… …   Wikipedia